sismid
Short course on Pathogen evolution, selection and immunity
View the Project on GitHub
trvrb/sismid
Time series analysis
Slides
Additional resources
Introductions to POMP (MIF):
Ionides et al. 2006
and 2011
,
Ionides Case Study: Polio in Wisconsin
and
Case Study: Dynamic Variation in Sexual Contact Rates
, and the
pomp page
Various Monte Carlo tutorials:
The Clever Machine
Particle MCMC:
Andrieu et al. 2010
Approximate Bayesian Computation:
Toni et al. 2009
Probes:
Kendall et al. 1997
Synthetic likelihood:
Wood 2010
WAIC and cross-validation:
Vehtari and Gelman 2014